The intelligence body is the foremost line in national security system by conducting early detection and early warning system in preventing and overcoming any threat to national security. The confidential character of the intelligence body eqquiped with special authority has made possible it becomes a subject of human right violation. However, the acknowledgement and protection of the human right law number 39 year 1999. This essay attempts to examine the complexion problems between the implementation of intelligence function to ensure the national security and the necessity of human right's protection in the implementation of intelligence task and authority; in its profesional etic code and sworm; penalty sanction given in the event any violation; and the multilayered oversight to intelligence bodies.