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"Identification of Polymorphic Markers for Breeding of Rice Tolerant to Phosphorus Defficiency. Joko Praseti- yono, Hajrial Aswidinnoor, Sugiono Moeljopawiro, Didy Sopandie, and Masdiar Bustamam. Information on poly- morphisms among rice parents are very important in rice breeding for tolerance to phosphorus defficiency. A study was conducted at the Molecular Biology Laboratory, Indonesian Center Agricultural Biotechnology and Genetic Resources (ICABIOGRAD) from October 2006 to July 2007 to identify polymorphism markers from 6 rice genotypes. The rice genotypes, i.e., Dodokan, Situ Bagendit, Batur, Kasalath, NIL-C443, dan K36-5-1-1 were analyzed for polymorphisms using 496 SSR markers, which cover the rice genomes. Seven of the 496 markers were used as foreground and recombinant selection markers, and the rests (489 markers) were used as background selection markers. PCR amplifi- cations were separated on a 5% polyacrylamide gel and colored by the silver staining method. Three different mar- kers among the seven foreground and recombinant selec- tion markers were selected from each crossing, which are tightly linked with Pup1 gene and have a distance less than 5 cM. These markers are Dodokan vs Kasalath (RM277, SSR3, RM519), Dodokan vs NIL-C443 (RM277, SSR3, RM519), Dodokan vs K36-5-1-1 (RM277, SSR3, RM519), Situ Bagendit vs Kasalath (RM28102, SSR3, RM519), Situ Bagendit vs NIL- C443 (RM28102, SSR3, RM519), Situ Bagendit vs K36-5-1-1 (RM511, SSR3, RM519), Batur vs Kasalath (RM277, RM1261, RM519), Batur vs NIL-C443 (RM277, RM1261, RM519), and Batur vs K36-5-1-1 (RM28102, SSR3). Variations in back- ground selection primers were found in each chromosome and in each parent combinations. Primers on chromosome 4, 5, and 12 showed the lowest polymorphisms; more primers are needed for these chromosomes."
JURAGBIO 4 (2) 2008
Artikel Jurnal  Universitas Indonesia Library
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"Information on genetic divergence of inbred lines and performance of the hybrids developed from the lines is a great value in maize hybrid program. A study was conducted to evaluate genetic diversity of six QPM and five normal maize inbred lines, to determine the relationship between genetic distance based on SSR markers and the grain yield of single cross hybrid, and to get information promising hybrid from the single cross of QPM hybrid. Twenty four polymorphic primers that covered the 10 maize chromosomes were used to fingerprint the lines, detecting in 94 alleles (average of 3.9 and a range of 2-6 alleles per locus). Genetic divergences were determined using the Jaccard’s similarity coefficient, and a dendrogram was constructed using the UPGMA. Cluster analysis divided the inbreds into two clusters that were confirmed by principal coordinate analysis. Two promising QPM hybrids that are crossed from different heterotic group were found. The estimated value of simple correlations (r) of GDs with the gain yield of single cross hybrid was negatif (-0.07). There is a need to conduct more field trials to obtain more accurate correlations, particularly in a practical utility for predicting maize hybrid performance for grain yield."
JURAGBIO 4 (2) 2008
Artikel Jurnal  Universitas Indonesia Library
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"Phalerin is an active component of mahkota dewa (Phaleria macrocarpa (scheff.) Boerl) proven to have an anti inflamation effect. The labeling of phalerin with gamma emiting radionuclides was aimed to study is pharmacokinetic behavior and particularly to trace its metabolites. The labeling with I was caried our using iodogen as oxidator. Radiolabeled compound was characterized by high performance liquid choromatography (HPLC) using C-18 column eluted with methanol 70% and detected with UV detector (z=291 nm) and by thin layer chromatography (TLC) using silica gel strips eluted with chloroform - methanol (9:2), and lebeling efficiency was determined using the same TLC system. Purification of radiolabeled product was carried out using size exclusion chromatography (Sephadex G-25 column) eluted with 0.05 M phosphate buffer pH 7.4 Biodistributions of I-phalerin in various organs of normal and inflammation - induced mice were observed at 1,4 and 24 hours post-intravenous injection. radiochemical purity of I-phalerin was 90.2 krang lebih 2.8% and increased to 96.0 krang lebih0,4% after purification. Radioactivities in inflamed tissue at 1,4 and 24 hours post injection were respectively 1.6 times, 1,4 times and 1.3 times higher than that in normal tissue. The results showed a significant uptake of radiolabeled phalerin in inflamed."
Artikel Jurnal  Universitas Indonesia Library
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Dyah Haryuningtyas Sawitri
"ABSTRAK
Pendahuluan :Trypanosoma evansi adalah protozoa berflagella yang bersirkulasi
di dalam darah secara ekstraseluler sebagai agen penyakit Surra serta menyerang
seluruh hewan vertebrata, serta berpotensi sebagai zoonosis. Informasi virulensi
isolat T. evansi sangat dibutuhkan untuk penentuan strategi pengobatan Surra di
daerah wabah dan endemis. Penelitian ini bertujuan untuk mengetahui variasi
virulensi isolat T. evansi yang dikoleksi dari berbagai wilayah di Indonesia
termasuk memperoleh marka genetik serta mengetahui profil sitokin pada mencit.
Disamping itu, dilakukan juga uji serologis pada peternak di daerah wabah Surra
Metode : Sebanyak 32 isolat lokal T. evansi dikonfimasi dengan PCR multiplex
(ITS-1; Te Ro Tat 1,2 VSG dan ESAG6/7), selanjutnya diuji virulensinya dengan
menginfeksikan104 parasit pada mencit galur DDY. Studi genotyping populasi
T. evansi dievaluasi dengan 8 marka mikrosatelit Tbb-1, Tbb-5, Tbb-9, Tbb-10,
MORF2-CA, M6C8-CA, MEST-19AT, MT3033-AT. Dua isolat yang berbeda
virulensi (tinggi-Bang87 dan rendah-Pml 287) dipilih untuk uji imunopatogenitas
sedangkan serum peternak diuji dengan metode FELISA dan CATT T. evansi.
Hasil : Dari 32 isolat tersebut terbagi menjadi 17 isolat bervirulensi tinggi, 11
isolat bervirulensi moderat dan 4 isolat bervirulensi rendah dengan 8 pola tingkat
parasitemia. Analisis Neigbour Joining (NJ) terhadap 8 lokus berdasarkan Multi
Lokus Genotipe (MLG) mikrosatelit terbagi menjadi 4 populasi, yaitu MLG A,
MLG B, MLG C dan MLG D. Analisis terhadap struktur populasi juga
memberikan hasil yang sama dengan terbentuknya 4 klaster. Hasil ini juga
membuktikan bahwa marka yang digunakan bersifat spesifik lokasi. Sebanyak
tiga marka mengindikasikan adanya asosiasi antara virulensi dan MLG (Tbb-1,
M6C8-CA dan MEST-19). Kadar IFN-γ meningkat secara tajam pada mencit
yang diinfeksi isolat Bang 87 pada 4hpi berkorelasi negatif yang signifikan
(p<0,05) dengan kadar IL-10, sedangkan pada mencit yang diinfeksi isolat Pml
287, peningkatan kadar IFNγ berkorelasi positif dengan kadar IL-10. Kematian
dini pada mencit yang diinfeksi isolat Bang 87 disebabkan oleh sindrom respon
inflamasi sitemik. Hasil uji serologis menunjukkan bahwa 4 dari 24 serum
peternak (16,67%) didaerah wabah positif dan seluruh serum negatif untuk
daerah non wabah.
Kesimpulan : Variasi virulensi T. evansi isolat Indonesia memiliki karakter
molekular yang berbeda serta menginduksi pola mediator sitokin pro dan
antiinflamasi yang berhubungan dengan pola manifestasi patologi yang berbeda.
Marka mikrosatelit pada studi ini mampu mengidentifikasi asal usul sumber
infeksi, dan tingkat virulensi isolat yang sedang bersirkulasi. Surra berpotensi
sebagai emerging zoonosis, terutama bagi peternak didaerah wabah dan endemis.

ABSTRACT
Introduction: Trypanosoma evansi is an extracellular homoflagellate of
protozoan blood causing Surra. The disease attacks all vertebrates and potentially
as zoonosis. Virulence analysis of T. evansi is a fundamental knowledge to
determine treatment strategies of Surra in both outbreak and endemic areas. The
aims of this study was to determine virulence variation of T. evansi isolates
collected from various regions in Indonesia and to obtained genetic markers as
well as cytokine profile in mice. In addition, serological test was also carried out
to farmers living in a Surra outbreak area
Methods: Total of 32 isolates of T. evansi corfirmed with multiplex PCR (ITS-1;
Te Ro Tat 1.2 VSG and ESAG6 / 7), were further tested with inoculation 104
parasite in DDY mice strain. The population genotype study of T. evansi was
evaluated with 8 microsatellite markers (Tbb-1, Tbb-5, Tbb-9, Tbb-10-CA
MORF2, M6C8-CA, MEST-19AT, MT3033-AT). Two different virulence
isolates, high-Bang87 and low-PML287 was selected to cytokine profile analysis
using ELISA, while farmers sera were tested using CATT and FELISA kits
Results: A total of 32 local isolates of T. evansi tested were divided into three
different virulences, i.e. 17 high virulence isolates, 11 moderate virulence and 4
low virulence isolates forming 8 pattern parasitemia levels. Based on Neigbour
Joining (NJ) on 8 Microsatellite Multilocus Genotype (MLGs) was grouped into
4 populations (MLG A, MLG B, MLG C and MLG D). Stucture population
analysis also provided the similar result generating 4 clusters. These results
indicated that the markers used in this study had a specific location property.
Three markers (TBB-1, and MEST M6C8-CA-19) showed an association
between virulence and MLG. IFN-γ levels increased significantly in mice
infected with Bang 87 isolate on 4th day post infection (dpi) having a significant
negative correlation (p <0.05) with increased IL-10 levels, whereas in mice
infected by PML 287 isolate, IFN-γ levels were positively correlated with IL- 10
levels. Early death in mice infected with Bang87 isolates was caused by systemic
inflammatory response syndrome (SIRS). Result of serological test showed that 4 out
of 24 farmers sera (16.67%) from outbreak areas are positive and all sample from
free area are negative.
Conclusion: Virulence variation of T. evansi isolates from Indonesia has
different molecular character and induces cytokine pattern of pro and antiinflammatory
mediators associated with distinct patterns of pathological
manifestations. The microsatellite markers found in this study are able to identify
origin of infection sources dan determine virulence of isolates that circulate on the
outbreak area. Surra is potential new emerging disease, particularly for farmers or
immunosurpressed individuals who living in both endemic and outbreak areas;Introduction: Trypanosoma evansi is an extracellular homoflagellate of
protozoan blood causing Surra. The disease attacks all vertebrates and potentially
as zoonosis. Virulence analysis of T. evansi is a fundamental knowledge to
determine treatment strategies of Surra in both outbreak and endemic areas. The
aims of this study was to determine virulence variation of T. evansi isolates
collected from various regions in Indonesia and to obtained genetic markers as
well as cytokine profile in mice. In addition, serological test was also carried out
to farmers living in a Surra outbreak area
Methods: Total of 32 isolates of T. evansi corfirmed with multiplex PCR (ITS-1;
Te Ro Tat 1.2 VSG and ESAG6 / 7), were further tested with inoculation 104
parasite in DDY mice strain. The population genotype study of T. evansi was
evaluated with 8 microsatellite markers (Tbb-1, Tbb-5, Tbb-9, Tbb-10-CA
MORF2, M6C8-CA, MEST-19AT, MT3033-AT). Two different virulence
isolates, high-Bang87 and low-PML287 was selected to cytokine profile analysis
using ELISA, while farmers sera were tested using CATT and FELISA kits
Results: A total of 32 local isolates of T. evansi tested were divided into three
different virulences, i.e. 17 high virulence isolates, 11 moderate virulence and 4
low virulence isolates forming 8 pattern parasitemia levels. Based on Neigbour
Joining (NJ) on 8 Microsatellite Multilocus Genotype (MLGs) was grouped into
4 populations (MLG A, MLG B, MLG C and MLG D). Stucture population
analysis also provided the similar result generating 4 clusters. These results
indicated that the markers used in this study had a specific location property.
Three markers (TBB-1, and MEST M6C8-CA-19) showed an association
between virulence and MLG. IFN-γ levels increased significantly in mice
infected with Bang 87 isolate on 4th day post infection (dpi) having a significant
negative correlation (p <0.05) with increased IL-10 levels, whereas in mice
infected by PML 287 isolate, IFN-γ levels were positively correlated with IL- 10
levels. Early death in mice infected with Bang87 isolates was caused by systemic
inflammatory response syndrome (SIRS). Result of serological test showed that 4 out
of 24 farmers sera (16.67%) from outbreak areas are positive and all sample from
free area are negative.
Conclusion: Virulence variation of T. evansi isolates from Indonesia has
different molecular character and induces cytokine pattern of pro and antiinflammatory
mediators associated with distinct patterns of pathological
manifestations. The microsatellite markers found in this study are able to identify
origin of infection sources dan determine virulence of isolates that circulate on the
outbreak area. Surra is potential new emerging disease, particularly for farmers or
immunosurpressed individuals who living in both endemic and outbreak areas;Introduction: Trypanosoma evansi is an extracellular homoflagellate of
protozoan blood causing Surra. The disease attacks all vertebrates and potentially
as zoonosis. Virulence analysis of T. evansi is a fundamental knowledge to
determine treatment strategies of Surra in both outbreak and endemic areas. The
aims of this study was to determine virulence variation of T. evansi isolates
collected from various regions in Indonesia and to obtained genetic markers as
well as cytokine profile in mice. In addition, serological test was also carried out
to farmers living in a Surra outbreak area
Methods: Total of 32 isolates of T. evansi corfirmed with multiplex PCR (ITS-1;
Te Ro Tat 1.2 VSG and ESAG6 / 7), were further tested with inoculation 104
parasite in DDY mice strain. The population genotype study of T. evansi was
evaluated with 8 microsatellite markers (Tbb-1, Tbb-5, Tbb-9, Tbb-10-CA
MORF2, M6C8-CA, MEST-19AT, MT3033-AT). Two different virulence
isolates, high-Bang87 and low-PML287 was selected to cytokine profile analysis
using ELISA, while farmers sera were tested using CATT and FELISA kits
Results: A total of 32 local isolates of T. evansi tested were divided into three
different virulences, i.e. 17 high virulence isolates, 11 moderate virulence and 4
low virulence isolates forming 8 pattern parasitemia levels. Based on Neigbour
Joining (NJ) on 8 Microsatellite Multilocus Genotype (MLGs) was grouped into
4 populations (MLG A, MLG B, MLG C and MLG D). Stucture population
analysis also provided the similar result generating 4 clusters. These results
indicated that the markers used in this study had a specific location property.
Three markers (TBB-1, and MEST M6C8-CA-19) showed an association
between virulence and MLG. IFN-γ levels increased significantly in mice
infected with Bang 87 isolate on 4th day post infection (dpi) having a significant
negative correlation (p <0.05) with increased IL-10 levels, whereas in mice
infected by PML 287 isolate, IFN-γ levels were positively correlated with IL- 10
levels. Early death in mice infected with Bang87 isolates was caused by systemic
inflammatory response syndrome (SIRS). Result of serological test showed that 4 out
of 24 farmers sera (16.67%) from outbreak areas are positive and all sample from
free area are negative.
Conclusion: Virulence variation of T. evansi isolates from Indonesia has
different molecular character and induces cytokine pattern of pro and antiinflammatory
mediators associated with distinct patterns of pathological
manifestations. The microsatellite markers found in this study are able to identify
origin of infection sources dan determine virulence of isolates that circulate on the
outbreak area. Surra is potential new emerging disease, particularly for farmers or
immunosurpressed individuals who living in both endemic and outbreak areas;Introduction: Trypanosoma evansi is an extracellular homoflagellate of
protozoan blood causing Surra. The disease attacks all vertebrates and potentially
as zoonosis. Virulence analysis of T. evansi is a fundamental knowledge to
determine treatment strategies of Surra in both outbreak and endemic areas. The
aims of this study was to determine virulence variation of T. evansi isolates
collected from various regions in Indonesia and to obtained genetic markers as
well as cytokine profile in mice. In addition, serological test was also carried out
to farmers living in a Surra outbreak area
Methods: Total of 32 isolates of T. evansi corfirmed with multiplex PCR (ITS-1;
Te Ro Tat 1.2 VSG and ESAG6 / 7), were further tested with inoculation 104
parasite in DDY mice strain. The population genotype study of T. evansi was
evaluated with 8 microsatellite markers (Tbb-1, Tbb-5, Tbb-9, Tbb-10-CA
MORF2, M6C8-CA, MEST-19AT, MT3033-AT). Two different virulence
isolates, high-Bang87 and low-PML287 was selected to cytokine profile analysis
using ELISA, while farmers sera were tested using CATT and FELISA kits
Results: A total of 32 local isolates of T. evansi tested were divided into three
different virulences, i.e. 17 high virulence isolates, 11 moderate virulence and 4
low virulence isolates forming 8 pattern parasitemia levels. Based on Neigbour
Joining (NJ) on 8 Microsatellite Multilocus Genotype (MLGs) was grouped into
4 populations (MLG A, MLG B, MLG C and MLG D). Stucture population
analysis also provided the similar result generating 4 clusters. These results
indicated that the markers used in this study had a specific location property.
Three markers (TBB-1, and MEST M6C8-CA-19) showed an association
between virulence and MLG. IFN-γ levels increased significantly in mice
infected with Bang 87 isolate on 4th day post infection (dpi) having a significant
negative correlation (p <0.05) with increased IL-10 levels, whereas in mice
infected by PML 287 isolate, IFN-γ levels were positively correlated with IL- 10
levels. Early death in mice infected with Bang87 isolates was caused by systemic
inflammatory response syndrome (SIRS). Result of serological test showed that 4 out
of 24 farmers sera (16.67%) from outbreak areas are positive and all sample from
free area are negative.
Conclusion: Virulence variation of T. evansi isolates from Indonesia has
different molecular character and induces cytokine pattern of pro and antiinflammatory
mediators associated with distinct patterns of pathological
manifestations. The microsatellite markers found in this study are able to identify
origin of infection sources dan determine virulence of isolates that circulate on the
outbreak area. Surra is potential new emerging disease, particularly for farmers or
immunosurpressed individuals who living in both endemic and outbreak areas;Introduction: Trypanosoma evansi is an extracellular homoflagellate of
protozoan blood causing Surra. The disease attacks all vertebrates and potentially
as zoonosis. Virulence analysis of T. evansi is a fundamental knowledge to
determine treatment strategies of Surra in both outbreak and endemic areas. The
aims of this study was to determine virulence variation of T. evansi isolates
collected from various regions in Indonesia and to obtained genetic markers as
well as cytokine profile in mice. In addition, serological test was also carried out
to farmers living in a Surra outbreak area
Methods: Total of 32 isolates of T. evansi corfirmed with multiplex PCR (ITS-1;
Te Ro Tat 1.2 VSG and ESAG6 / 7), were further tested with inoculation 104
parasite in DDY mice strain. The population genotype study of T. evansi was
evaluated with 8 microsatellite markers (Tbb-1, Tbb-5, Tbb-9, Tbb-10-CA
MORF2, M6C8-CA, MEST-19AT, MT3033-AT). Two different virulence
isolates, high-Bang87 and low-PML287 was selected to cytokine profile analysis
using ELISA, while farmers sera were tested using CATT and FELISA kits
Results: A total of 32 local isolates of T. evansi tested were divided into three
different virulences, i.e. 17 high virulence isolates, 11 moderate virulence and 4
low virulence isolates forming 8 pattern parasitemia levels. Based on Neigbour
Joining (NJ) on 8 Microsatellite Multilocus Genotype (MLGs) was grouped into
4 populations (MLG A, MLG B, MLG C and MLG D). Stucture population
analysis also provided the similar result generating 4 clusters. These results
indicated that the markers used in this study had a specific location property.
Three markers (TBB-1, and MEST M6C8-CA-19) showed an association
between virulence and MLG. IFN-γ levels increased significantly in mice
infected with Bang 87 isolate on 4th day post infection (dpi) having a significant
negative correlation (p <0.05) with increased IL-10 levels, whereas in mice
infected by PML 287 isolate, IFN-γ levels were positively correlated with IL- 10
levels. Early death in mice infected with Bang87 isolates was caused by systemic
inflammatory response syndrome (SIRS). Result of serological test showed that 4 out
of 24 farmers sera (16.67%) from outbreak areas are positive and all sample from
free area are negative.
Conclusion: Virulence variation of T. evansi isolates from Indonesia has
different molecular character and induces cytokine pattern of pro and antiinflammatory
mediators associated with distinct patterns of pathological
manifestations. The microsatellite markers found in this study are able to identify
origin of infection sources dan determine virulence of isolates that circulate on the
outbreak area. Surra is potential new emerging disease, particularly for farmers or
immunosurpressed individuals who living in both endemic and outbreak areas;Introduction: Trypanosoma evansi is an extracellular homoflagellate of
protozoan blood causing Surra. The disease attacks all vertebrates and potentially
as zoonosis. Virulence analysis of T. evansi is a fundamental knowledge to
determine treatment strategies of Surra in both outbreak and endemic areas. The
aims of this study was to determine virulence variation of T. evansi isolates
collected from various regions in Indonesia and to obtained genetic markers as
well as cytokine profile in mice. In addition, serological test was also carried out
to farmers living in a Surra outbreak area
Methods: Total of 32 isolates of T. evansi corfirmed with multiplex PCR (ITS-1;
Te Ro Tat 1.2 VSG and ESAG6 / 7), were further tested with inoculation 104
parasite in DDY mice strain. The population genotype study of T. evansi was
evaluated with 8 microsatellite markers (Tbb-1, Tbb-5, Tbb-9, Tbb-10-CA
MORF2, M6C8-CA, MEST-19AT, MT3033-AT). Two different virulence
isolates, high-Bang87 and low-PML287 was selected to cytokine profile analysis
using ELISA, while farmers sera were tested using CATT and FELISA kits
Results: A total of 32 local isolates of T. evansi tested were divided into three
different virulences, i.e. 17 high virulence isolates, 11 moderate virulence and 4
low virulence isolates forming 8 pattern parasitemia levels. Based on Neigbour
Joining (NJ) on 8 Microsatellite Multilocus Genotype (MLGs) was grouped into
4 populations (MLG A, MLG B, MLG C and MLG D). Stucture population
analysis also provided the similar result generating 4 clusters. These results
indicated that the markers used in this study had a specific location property.
Three markers (TBB-1, and MEST M6C8-CA-19) showed an association
between virulence and MLG. IFN-γ levels increased significantly in mice
infected with Bang 87 isolate on 4th day post infection (dpi) having a significant
negative correlation (p <0.05) with increased IL-10 levels, whereas in mice
infected by PML 287 isolate, IFN-γ levels were positively correlated with IL- 10
levels. Early death in mice infected with Bang87 isolates was caused by systemic
inflammatory response syndrome (SIRS). Result of serological test showed that 4 out
of 24 farmers sera (16.67%) from outbreak areas are positive and all sample from
free area are negative.
Conclusion: Virulence variation of T. evansi isolates from Indonesia has
different molecular character and induces cytokine pattern of pro and antiinflammatory
mediators associated with distinct patterns of pathological
manifestations. The microsatellite markers found in this study are able to identify
origin of infection sources dan determine virulence of isolates that circulate on the
outbreak area. Surra is potential new emerging disease, particularly for farmers or
immunosurpressed individuals who living in both endemic and outbreak areas;Introduction: Trypanosoma evansi is an extracellular homoflagellate of
protozoan blood causing Surra. The disease attacks all vertebrates and potentially
as zoonosis. Virulence analysis of T. evansi is a fundamental knowledge to
determine treatment strategies of Surra in both outbreak and endemic areas. The
aims of this study was to determine virulence variation of T. evansi isolates
collected from various regions in Indonesia and to obtained genetic markers as
well as cytokine profile in mice. In addition, serological test was also carried out
to farmers living in a Surra outbreak area
Methods: Total of 32 isolates of T. evansi corfirmed with multiplex PCR (ITS-1;
Te Ro Tat 1.2 VSG and ESAG6 / 7), were further tested with inoculation 104
parasite in DDY mice strain. The population genotype study of T. evansi was
evaluated with 8 microsatellite markers (Tbb-1, Tbb-5, Tbb-9, Tbb-10-CA
MORF2, M6C8-CA, MEST-19AT, MT3033-AT). Two different virulence
isolates, high-Bang87 and low-PML287 was selected to cytokine profile analysis
using ELISA, while farmers sera were tested using CATT and FELISA kits
Results: A total of 32 local isolates of T. evansi tested were divided into three
different virulences, i.e. 17 high virulence isolates, 11 moderate virulence and 4
low virulence isolates forming 8 pattern parasitemia levels. Based on Neigbour
Joining (NJ) on 8 Microsatellite Multilocus Genotype (MLGs) was grouped into
4 populations (MLG A, MLG B, MLG C and MLG D). Stucture population
analysis also provided the similar result generating 4 clusters. These results
indicated that the markers used in this study had a specific location property.
Three markers (TBB-1, and MEST M6C8-CA-19) showed an association
between virulence and MLG. IFN-γ levels increased significantly in mice
infected with Bang 87 isolate on 4th day post infection (dpi) having a significant
negative correlation (p <0.05) with increased IL-10 levels, whereas in mice
infected by PML 287 isolate, IFN-γ levels were positively correlated with IL- 10
levels. Early death in mice infected with Bang87 isolates was caused by systemic
inflammatory response syndrome (SIRS). Result of serological test showed that 4 out
of 24 farmers sera (16.67%) from outbreak areas are positive and all sample from
free area are negative.
Conclusion: Virulence variation of T. evansi isolates from Indonesia has
different molecular character and induces cytokine pattern of pro and antiinflammatory
mediators associated with distinct patterns of pathological
manifestations. The microsatellite markers found in this study are able to identify
origin of infection sources dan determine virulence of isolates that circulate on the
outbreak area. Surra is potential new emerging disease, particularly for farmers or
immunosurpressed individuals who living in both endemic and outbreak areas;Introduction: Trypanosoma evansi is an extracellular homoflagellate of
protozoan blood causing Surra. The disease attacks all vertebrates and potentially
as zoonosis. Virulence analysis of T. evansi is a fundamental knowledge to
determine treatment strategies of Surra in both outbreak and endemic areas. The
aims of this study was to determine virulence variation of T. evansi isolates
collected from various regions in Indonesia and to obtained genetic markers as
well as cytokine profile in mice. In addition, serological test was also carried out
to farmers living in a Surra outbreak area
Methods: Total of 32 isolates of T. evansi corfirmed with multiplex PCR (ITS-1;
Te Ro Tat 1.2 VSG and ESAG6 / 7), were further tested with inoculation 104
parasite in DDY mice strain. The population genotype study of T. evansi was
evaluated with 8 microsatellite markers (Tbb-1, Tbb-5, Tbb-9, Tbb-10-CA
MORF2, M6C8-CA, MEST-19AT, MT3033-AT). Two different virulence
isolates, high-Bang87 and low-PML287 was selected to cytokine profile analysis
using ELISA, while farmers sera were tested using CATT and FELISA kits
Results: A total of 32 local isolates of T. evansi tested were divided into three
different virulences, i.e. 17 high virulence isolates, 11 moderate virulence and 4
low virulence isolates forming 8 pattern parasitemia levels. Based on Neigbour
Joining (NJ) on 8 Microsatellite Multilocus Genotype (MLGs) was grouped into
4 populations (MLG A, MLG B, MLG C and MLG D). Stucture population
analysis also provided the similar result generating 4 clusters. These results
indicated that the markers used in this study had a specific location property.
Three markers (TBB-1, and MEST M6C8-CA-19) showed an association
between virulence and MLG. IFN-γ levels increased significantly in mice
infected with Bang 87 isolate on 4th day post infection (dpi) having a significant
negative correlation (p <0.05) with increased IL-10 levels, whereas in mice
infected by PML 287 isolate, IFN-γ levels were positively correlated with IL- 10
levels. Early death in mice infected with Bang87 isolates was caused by systemic
inflammatory response syndrome (SIRS). Result of serological test showed that 4 out
of 24 farmers sera (16.67%) from outbreak areas are positive and all sample from
free area are negative.
Conclusion: Virulence variation of T. evansi isolates from Indonesia has
different molecular character and induces cytokine pattern of pro and antiinflammatory
mediators associated with distinct patterns of pathological
manifestations. The microsatellite markers found in this study are able to identify
origin of infection sources dan determine virulence of isolates that circulate on the
outbreak area. Surra is potential new emerging disease, particularly for farmers or
immunosurpressed individuals who living in both endemic and outbreak areas;Introduction: Trypanosoma evansi is an extracellular homoflagellate of
protozoan blood causing Surra. The disease attacks all vertebrates and potentially
as zoonosis. Virulence analysis of T. evansi is a fundamental knowledge to
determine treatment strategies of Surra in both outbreak and endemic areas. The
aims of this study was to determine virulence variation of T. evansi isolates
collected from various regions in Indonesia and to obtained genetic markers as
well as cytokine profile in mice. In addition, serological test was also carried out
to farmers living in a Surra outbreak area
Methods: Total of 32 isolates of T. evansi corfirmed with multiplex PCR (ITS-1;
Te Ro Tat 1.2 VSG and ESAG6 / 7), were further tested with inoculation 104
parasite in DDY mice strain. The population genotype study of T. evansi was
evaluated with 8 microsatellite markers (Tbb-1, Tbb-5, Tbb-9, Tbb-10-CA
MORF2, M6C8-CA, MEST-19AT, MT3033-AT). Two different virulence
isolates, high-Bang87 and low-PML287 was selected to cytokine profile analysis
using ELISA, while farmers sera were tested using CATT and FELISA kits
Results: A total of 32 local isolates of T. evansi tested were divided into three
different virulences, i.e. 17 high virulence isolates, 11 moderate virulence and 4
low virulence isolates forming 8 pattern parasitemia levels. Based on Neigbour
Joining (NJ) on 8 Microsatellite Multilocus Genotype (MLGs) was grouped into
4 populations (MLG A, MLG B, MLG C and MLG D). Stucture population
analysis also provided the similar result generating 4 clusters. These results
indicated that the markers used in this study had a specific location property.
Three markers (TBB-1, and MEST M6C8-CA-19) showed an association
between virulence and MLG. IFN-γ levels increased significantly in mice
infected with Bang 87 isolate on 4th day post infection (dpi) having a significant
negative correlation (p <0.05) with increased IL-10 levels, whereas in mice
infected by PML 287 isolate, IFN-γ levels were positively correlated with IL- 10
levels. Early death in mice infected with Bang87 isolates was caused by systemic
inflammatory response syndrome (SIRS). Result of serological test showed that 4 out
of 24 farmers sera (16.67%) from outbreak areas are positive and all sample from
free area are negative.
Conclusion: Virulence variation of T. evansi isolates from Indonesia has
different molecular character and induces cytokine pattern of pro and antiinflammatory
mediators associated with distinct patterns of pathological
manifestations. The microsatellite markers found in this study are able to identify
origin of infection sources dan determine virulence of isolates that circulate on the
outbreak area. Surra is potential new emerging disease, particularly for farmers or
immunosurpressed individuals who living in both endemic and outbreak areas"
2016
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UI - Disertasi Membership  Universitas Indonesia Library
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"Microsatellite Marker-based Genetic Characterization of Indonesian Maize Inbred Collections. Marcia B. Pabendon, M. Dahlan, Sutrisno, and M. L. C. George. Information on genetic relationships among available crop germplasm such as maize inbred lines, has important implications to breeding programs. A set of 26 maize inbreds togeher with six standard lines from CIMMYT (CML51, CML292, CML202, CML206, CML236, dan CML396), was characterized using 26 SSR markers, which were coverage of the maize genomes. The objective of this study was to analyze genetic diversities among the Indonesian maize inbred collections. Polymorphism Information Content (PIC) value and the observed genetic distance indicated the existence of large variabilities among the inbreds. Cluster analysis based on 27% of the Jaccard’s similarity coefficient placed the inbreds into three groups. Genetic distances among all the possible pairs without the standard maize lines varied from 0.32 (KSX360F2-5-1-3-1v vs KSX2601F2-5-1-1-v) to 0.88 (PT963298-1-B-B-Bv vs Mr13). Cluster and Principal Coordinate Analysis of the genetic distances, revealed a clear differentiation of the inbred lines into groups according to their source populations. This clustering were consistent with those of the known pedigree records of the inbreds based on their morphological characters. These results support the use of morphological traits in the production of maize hybrids. The SSR markers proved to be effective to characterize, identify, and demonstrate genetic similarities among the maize inbred lines."
JURAGBIO 2 (2) 2008
Artikel Jurnal  Universitas Indonesia Library
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Ritonga, Parmanan KP
Depok: Fakultas Teknik Universitas Indonesia, 1992
S40871
UI - Skripsi Membership  Universitas Indonesia Library
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Suroso
"Pestisida adalah suatu senyawa kimia yang merupakan bahan beracun dan berbahaya, yang bila tidak dikelola dengan bijaksana dan baik dapat menimbulkan dampak negatif terhadap kesehatan manusia dan lingkunganya. Program pengamanan penggunaan pestisida pada tingkat petani kurang memadai, dampak negatifnya dapat berupa keracunan akut atau pun akibat keracunan jangka panjang juga tidak dapat terhindar. Ini terbukti masih tingginya angka keracunan pada petani di Kota Jambi pada tahun 2001.
Penelitian ini bertujuan mengetahui gambaran kondisi keracunan pungguna pestisida pada petani sayur di Kota Jambi. Propinsi Jambi dan fakfor-fakfor apa yang berhubungan dengan keracunan tersebut. Faktor-faktor yang diduga adalah umur, jenis kelamin, lama pendidikan, status pekerjaan petani, pengetahuan, perilaku, penggunaan APD, leas lahan, lama penyemprotan perhari, frekuensi penyemprotan per minggu, lama penanganan, teknik penyemprotan dan jenis/goloragan pestisida yang digunakan.
Penelitian bersifat deskriptif analitik menggunakan metode Observasional dengan desain penelitian kasus kontrol dengan jumlah responden sebanyak 134 petani untuk kasus dan 134 petani untuk kontrol. Hasil uji bivariate dengan menggunakan uji statistik chi-square menunjukan beberapa variabel yang berhubungan signifikan/bermakna adalah variabel umur (p-value = 0,009), perilaku petani (p-value = 0,001), penggunaan APD (p-value = 0,000), lama penyemprotan perjam perhari (p-value = 0,006), dan lama penanganan (p-value = 0,037) dengan kejadian keracunan sebagai variabel dependen, sedangkan untuk hubungan yang tidak signifikan/bermakna adalah variabel jenis kelamin/sex, lama pendidikan responden, pengetahuan, luas lahan, frekuensi menyemprot hari per minggu, teknik penyemprotan, dan jenis/golongan pestisida dengan kejadian keracunan pestisida sebagai variabel dependen.
Dari hasil uji multivariate Regresi Logistik Ganda Prediksi, maka model akhir di dapat adalah variabel umur (p-value = 0,015), perilaku (p-value = 0,000), dan penggunaan alat pelindung diri (p-value = 0,000). Dari ketiga variabel tersebut maka variabel independen yang paling berhubungan adalah perilaku (dilihat dari angka Odds Ratio serbesar yaitu 3,121).
Hasil uji interaksi memberikan petunjuk bahwa hubungan penggunaan APD dengan kejadian keracunan memberikan efek yang berbeda untuk mereka yang berumur muda dan tua, begitu juga sebaliknya hubungan umur dengan kejadian keracunan memberikan efek yang berbeda untuk mereka yang menggunakan APD yang lengkap dan tidak lengkap.
Agar para petani dapat terhindar dan keterpaparan pestisida pada waktu melaksanakan kegiatannya perlu dilakukan intervensi dalam hal penyuluhan, bimbingan dan pembinaan tentang cara-cara penanganan pestisida yang lebih baik dan bijaksana secara lintas sektoral, dan pemantauan oleh instansi yang; berkompeten secara berkesinambungan sesuai dengan bidang tugas masing-masing.
Daftar bacaan : 44 ( 1976 - 2001 ).

Factors Related to the Pesticide Poisoning on Vegetable Farmer in Jambi City in The Year of 2001Pesticide is the poisoned and dangerous chemical agent which mismanagement will result negative impact for environment and human health. In adequate utilization and safety program on fanner has negative impact as acute poisoning or Elm effect of long term can not avoided as well. This is proved by the high level poisoning on the farmer in Jambi in the year of 2002.
The research's objective is to find out the poisoning condition description of pesticide user on vegetable fanner in Jambi, Jambi Province and related factor to the poisoning incident. Sex, Educational, Status of Farmer Job, Knowledge, habitual, occupational application, daily and weekly time of spraying, spraying technique, and pesticide variety, are the suspicious factors of poisoning.
This is an analytic descriptive study, using observational method by case control research design with 134 fanner as case and 134 farmers as control. Bivariate test result using chi-square test show that several significant variable are age (p-value = 0,0009), farmer habit (p-value = 0,0001) APD apply (p-value 0,0000), daily spraying (p-value = 0,0006) and time of handling (p-value = 0,037) with poisoning incident as dependent variable, while insignificant relationship is sex variable, educational background, knowledge, vast of field, weekly frequency of spraying, spraying technique, pesticide variety with poisoning incident as the dependent variable.
From multivariate test, Double prediction of logistic regression, then last model found is age variable (p-value = 0,015), habitual (p-value = 0,0000) and APD application (p-value = 0,0000). The most related variable is habitual (Derived from highest odds ratio of 3,121).
Interaction test show the direction that the relationship of APD application with poisoning incident give different effect for those with old and young of age. Poisoning give the different effect for those who applying completeness and incompleteness of APD.
In order to avoid pesticide exposure in the farmer activity, intervention need to be given in the matter of counseling, guiding how to pesticide handling correctly, and also monitoring by competent authority continuously according to each occupational field.
References: 44 ( 1976 -- 2001 )
"
Depok: Fakultas Kesehatan Masyarakat Universitas Indonesia, 2002
T8589
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